Search results for "Polymer Dynamics"

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NOISE EFFECTS IN POLYMER DYNAMICS

2008

The study of the noise induced effects on the dynamics of a chain molecule crossing a potential barrier, in the presence of a metastable state, is presented. A two-dimensional stochastic version of the Rouse model for a flexible polymer has been adopted to mimic the molecular dynamics and to take into account the interactions between adjacent monomers. We obtain a nonmonotonic behavior of the mean first passage time and its standard deviation, of the polymer centre of inertia, with the noise intensity. These findings reveal a noise induced effect on the mean crossing time. The role of the polymer length is also investigated.

Physicschemistry.chemical_classificationPolymer DynamicsQuantitative Biology::BiomoleculesStatistical Mechanics (cond-mat.stat-mech)Applied Mathematicsmedia_common.quotation_subjectDynamics (mechanics)FOS: Physical sciencesPolymerInertiaStandard deviationCondensed Matter::Soft Condensed MatterMolecular dynamicschemistryModeling and SimulationMetastabilityRectangular potential barrierStatistical physicsFirst-hitting-time modelEngineering (miscellaneous)Condensed Matter - Statistical Mechanicsmedia_commonInternational Journal of Bifurcation and Chaos
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Resonant activation in polymer translocation: new insights into the escape dynamics of molecules driven by an oscillating field

2010

The translocation of molecules across cellular membranes or through synthetic nanopores is strongly affected by thermal fluctuations. In this work we study how the dynamics of a polymer in a noisy environment changes when the translocation process is driven by an oscillating electric field. An improved version of the Rouse model for a flexible polymer has been adopted to mimic the molecular dynamics, by taking into account the harmonic interactions between adjacent monomers and the excluded-volume effect by introducing a Lennard–Jones potential between all beads. A bending recoil torque has also been included in our model. The polymer dynamics is simulated in a two-dimensional domain by num…

Work (thermodynamics)Field (physics)Polymersmedia_common.quotation_subjectBiophysicsThermal fluctuationsResonant activationMolecular Dynamics SimulationInertiaNoise (electronics)Settore FIS/03 - Fisica Della MateriaMolecular dynamicsStructural BiologyOscillometryMolecular Biologymedia_commonPhysics::Biological PhysicsQuantitative Biology::BiomoleculesPolymer dynamicChemistryDynamics (mechanics)Equations of motionCell BiologySettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)Condensed Matter::Soft Condensed MatterClassical mechanicsModels ChemicalChemical physicsOscillating fieldsThermodynamicsPolymer dynamics; Resonant activation; Oscillating fieldsAlgorithms
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